PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_022047-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 485aa    MW: 53564.6 Da    PI: 6.8417
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_022047-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH162.1e-053553921254
                    HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  NNU_022047-RA 355 RKEKLGDRITALQQLVSPF-----GKTDTASVLFEAIEYIKFL 392
                    677888999*******998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.227343392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-10353401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.60E-6353397No hitNo description
Gene3DG3DSA:4.10.280.102.1E-7357396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MADQFQTGVC SGNWWNPTRN GFNGNSSPCS TALNDIGSFG WPTEMVDMKT RSTEESASVC  60
DSSIVFSDTQ KQQVADSVSG GGVLMDSTLQ IMGFGLSSPT TVDWNQALLR SSGRGEANFH  120
SMLQEELSSR HSFRQETSME SSQLQKEWSP KNFSVSGEDS SINALKQINQ VFALDQQRLN  180
SINSSSECTV TCQGLPTSFP MSSTSYGCTS TLLQGLFETD PQSQQSSFEN GSINLLPNCR  240
INSNDISPSW PKFSQLLKTS PPKQQSTNQL HFSNKGPFWN ASAAAMNEVR SSYFPSSQTQ  300
LLTPTFEEKP NCSNLTAKSS TEDVRDSASA VKKGNSEPAF KRPRIETPLP TFKVRKEKLG  360
DRITALQQLV SPFGKTDTAS VLFEAIEYIK FLHDQVSVSF KYSIYEKWSF HSTQAGFHNC  420
CLVVLSQQKK RLSVMQNSDK SKEGEAHKPD LRSRGLCLVP ISSTYPVTNE TAADFWTPTF  480
GGTYR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240994.10.0PREDICTED: transcription factor bHLH123-like
TrEMBLD7SSM50.0D7SSM5_VITVI; Putative uncharacterized protein
STRINGVIT_00s0274g00070.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-57bHLH family protein